PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00763g00337.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 588aa    MW: 65899.9 Da    PI: 4.9929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00763g00337.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH382.8e-12252274426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               e C ++++tG+Ck+G +CkF+H+
  Peaxi162Scf00763g00337.1 252 EDCAYYMKTGICKFGLNCKFNHP 274
                               89********************8 PP

2zf-CCCH29.51.3e-09302324527
                               --SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                               +C++++  G CkyG+ Ck++H++
  Peaxi162Scf00763g00337.1 302 ECKYYLTAGGCKYGNACKYNHSR 324
                               7********************95 PP

3zf-CCCH39.87.7e-13346368426
                               ---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                               ++C++++rtG CkyG++C+F+H+
  Peaxi162Scf00763g00337.1 346 KECPYYMRTGSCKYGSNCRFHHP 368
                               68********************9 PP

4zf-CCCH277.5e-09482508127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+ff +tG Cky ++CkF+H++
  Peaxi162Scf00763g00337.1 482 PGQPDCSFFVKTGDCKYKSTCKFHHPK 508
                               5789*********************96 PP

5zf-CCCH375.8e-12529554227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C+f++r+G+Ck+G+ CkF H++
  Peaxi162Scf00763g00337.1 529 DQAVCSFYSRYGICKFGPACKFDHPE 554
                               6789********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-6248278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788248276IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5248275IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-10252274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4254274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263297325IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027297324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5302325IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.361342370IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7345370IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-10346368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6348367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591481509IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4481508IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6483508IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5486510IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5525552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14527555IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6527554IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9529554IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MELPVESELQ HMQTLNQPNP RNLGFLPDPN LQNPNHNPQN YDDDDDDEMV EIISEELQSL  60
VLKEAFNESK GVDGIGNSLL PVLESSGNGW GDDCYDDGDY YRSENVNGDE AGSKEWGLNE  120
NGDEAGWKGE RGFDGNGDEA GWNREGGFNG NDDEVSWRER GYNEKGGEAG WMERGFNENG  180
DEAGWKRDTG FNGNGDEASW RRDRGFNENG DEERWKKGGF NENGNLAGWK GERGFNGNNT  240
RRLNYPLRPD AEDCAYYMKT GICKFGLNCK FNHPSHRRNQ QWTKQKEESE ERTSEERAGQ  300
IECKYYLTAG GCKYGNACKY NHSRGKGISP VVDFNFLGLP VRPGDKECPY YMRTGSCKYG  360
SNCRFHHPDP STLTGGIPSS GYNNGGSAPV RSASYPTVSS WSSPKPLNET APFVPVVYPA  420
SRGIPMPPPS PQWNEYQAPA YSTTEKSLPA HPAFTMRDPS TKTNFYPRHQ QPWIVEEYPE  480
RPGQPDCSFF VKTGDCKYKS TCKFHHPKTQ ISKTNSIVLN DKGLPLRPDQ AVCSFYSRYG  540
ICKFGPACKF DHPEHYDISD SSTGSMFDQP SFGNSATTDG TRMARKEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260209e-51AC226020.1 Solanum lycopersicum chromosome 6 clone C06SLm0127C05, complete sequence.
GenBankHG9755189e-51HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347414.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X1
TrEMBLM1CKS70.0M1CKS7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000696260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-106C3H family protein